Abstract

The purpose of this study is to evaluate the applicability of a nonorganic DNA extraction method for use in the analysis of environmentally compromised forensic hair shaft and tooth samples. The condition of the samples included cases of water decomposition, severe incineration, and varying stages of putrefaction. Enzymatic amplification and manual sequencing of the first segment of the mitochondrial hypervariable region were performed successfully on each of the 20 autopsied individuals. The results indicate that the silica-based extraction method produces mtDNA suitable for genetic identification from forensic samples including hair shafts and teeth.

References

1.
Hutchinson
C A
,
Newbold
J E
,
Potter
S S
,
Edgell
M H
.
Maternal inheritance of mammalian mitochondrial DNA
.
Nature
 0028-0836
1974
;
251
:
536
-
8
.
2.
Greenberg
B D
,
Newbold
J E
,
Sugino
A
.
Intraspecific nucleotide sequence variability surrounding the origin of replication in human mitochondrial DNA
.
Gene
 0378-1119
1983
;
21
:
33
-
49
.
3.
Brown
W M
,
Prager
E M
,
Wang
A
,
Wilson
A C
.
Mitochondrial DNA sequences of primates: tempo and mode of evolution
.
J Mol Evol
1982
;
18
:
225
-
39
.
4.
Cann
R L
,
Stoneking
M
,
Wilson
A C
.
Mitochondrial DNA and human evolution
.
Nature
 0028-0836
1987
;
325
:
31
-
6
.
5.
Allen
M
,
Engstrom
A S
,
Meyers
S
,
Handt
O
,
Saldeen
T
,
von Haeseler
A
, et al
.
Mitochondrial DNA sequencing of shed hairs and saliva on robbery caps: sensitivity and matching probabilities
.
J Forensic Sci
1998
;
43
:
453
-
64
.
6.
Ginther
C
,
Issel-Tarver
L
,
King
M C
.
Identifying individuals by sequencing mitochondrial DNA from teeth
.
Nat Genet
1992
;
2
:
135
-
8
.
7.
Higuchi
R
,
von Beroldingen
C H
,
Sensabaugh
G F
,
Erlich
H A
.
DNA typing from single hairs
.
Nature
 0028-0836
1988
;
332
:
543
-
6
.
8.
Holland
M M
,
Fisher
D L
,
Mitchell
L G
,
Rodriguez
W C
,
Canik
J J
,
Merril
C R
, et al
.
Mitochondrial DNA sequence analysis of human skeletal remains: Identification of remains from the Vietnam War
.
J Forensic Sci
1993
;
13
:
82
-
92
.
9.
Piercy
R
,
Sullivan
K M
,
Benson
N
,
Gill
P
.
The application of mitochondrial DNA typing to the study fo white Caucasian genetic identification
.
Int J of Leg Med
1993
;
106
:
85
-
90
.
10.
Stoneking
M
,
Hedgecock
D
,
Higuchi
R G
,
Vigilant
L
,
Erlich
H A
.
Population variation of human mtDNA control region sequences detected by enzymatic amplification and sequence-specific oligonucleotide probes
.
Am J Hum Genet
1991
;
48
:
370
-
82
.
11.
Sweet
D J
,
Sweet
C H
.
DNA analysis of dental pulp to link incinerated remains of homicide victim to crime scene
.
J Forensic Sci
1995
;
40
:
310
-
4
.
12.
Wilson
M R
,
Holland
M M
,
Stoneking
M
,
DiZinno
J A
,
Budowle
B
.
Guidelines for the use of mitochondrial DNA sequencing in forensic science
.
Crime Lab Dig
1993
;
20
:
68
-
77
.
13.
Wilson
M R
,
DiZinno
J A
,
Polanskey
D
,
Replogle
J
,
Budowle
B
.
Validation of mitochondrial DNA sequencing for forensic casework analysis
.
Int J of Legal Med
1995
;
108
:
68
-
74
.
14.
Potsch
L
,
Meyer
U
,
Rothschild
S
,
Schneider
P M
,
Rittner
C
.
Application of DNA techniques for identification using human dental pulp as a source of DNA
.
Int J Legal Med
1992
;
105
:
139
-
43
.
15.
Schwartz
T R
,
Schwartz
E A
,
Mieszerski
L
,
McNally
L
,
Kobilinsky
L
.
Characterization of deoxyribonucleic acid (DNA) obtained from teeth subjected to various environmental conditions
.
J Forensic Sci
1991
;
36
:
979
-
90
.
16.
Smith
B C
,
Fisher
D L
,
Weedn
V W
,
Warnock
G R
,
Holland
M M
.
A systematic approach to the sampling of dental DNA
.
J Forensic Sci
1993
;
38
:
1194
-
209
.
17.
Westwood
R A
,
Werrett
D J
.
An evaluation of the polymerase chain reaction method of forensic applications
.
Forensic Sci Int
1990
;
45
:
201
-
15
.
18.
Vigilant
L
,
Pennington
R
,
Harpending
H
,
Kocher
T D
,
Wilson
A C
.
Mitochondrial DNA sequences in single hairs from a southern African population
.
Proc Natl Acad Sci USA
1989
;
86
:
9350
-
4
.
19.
Uchihi
R
,
Tamaki
K
,
Kojima
T
,
Yamamoto
T
,
Katsumata
Y
.
Deoxyribonucleic acid (DNA) typing of human leukocyte antigen (HLA) - DQA1 from single hairs in Japanese
.
J Forensic Sci
1992
;
37
:
853
-
9
.
20.
Wilson
M R
,
Polanskey
D
,
Butler
J
,
DiZinno
J A
,
Replogle
J
,
Budowle
B
.
Extraction, PCR amplification and sequencing of mitochondrial DNA from human hair shafts
.
BioTechn
1995
;
18
:
662
-
9
.
21.
Yoshii
T
,
Tamura
K
,
Ishiyama
I
.
Presence of a PCR-inhibitor in hairs
.
Nippon Hoigaku Zasshi
 0047-1887
1992
;
46
:
313
-
6
.
22.
Baker
L E
.
DNA from hair
. In:
DeGusta
D
, editor.
Methods in Molecular Biology: Ancient DNA Techniques
; Chapter 12 (in press).
23.
Hoss
M
,
Paabo
S
.
DNA extraction from Pleistocene bones by a silica-based purification method
.
Nucleic Acids Research
 0305-1048
1993
;
21
:
3913
-
4
.
24.
Boom
R
,
Sol
C J
,
Salimans
M M
,
Jansen
C L
,
Wertheim-van Dillen
P M
,
van der Noordaa
J
.
Rapid and simple method for purification of nucleic acids
.
J Clin Microbiol
1990
;
28
:
495
-
503
.
25.
Stone
A C
,
Stoneking
M
.
mtDNA analysis of a prehistoric Oneota population: implications for the peopling of the New World
.
Am J Hum Genet
1998
;
62
:
1153
-
70
.
26.
Flournoy
L E
.
Analysis of polymorphic nuclear markers in DNA extracted from archived Native American hair shafts
.
Proceedings of the American Association of Physical Anthropologists; April 26–May 1 1999
,
Columbus, OH
, Supplement 28:129.
27.
Benedix
D C
,
Herrmann
N P
,
Haskins
V A
,
Flournoy
L E
.
Analysis of dental remains from Honduran ossuary caves
.
Proceedings of the American Association of Physical Anthropologists
; April 26–May 1 1999,
Columbus, OH
, Supplement 28:90.
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